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SCT
★ ★ ★ ★ ☆ (4.8 rating) spinalcordtoolbox.com
SCT VPS NVMe Server Hosting - Linux
Spinal Cord Toolbox (SCT) is a comprehensive, free and open-source set of command-line tools dedicated to the processing and analysis of spinal cord MRI data.
Key Features
- Segmentation of the spinal cord and gray matter
- Segmentation of pathologies (e.g. multiple sclerosis lesions)
- Detection of anatomical highlights (e.g. ponto-medullary junction, spinal cord centerline, vertebral levels)
- Registration to template, and deformation (e.g. straightening)
- Motion correction for diffusion and functional MRI time series
- Computation of quantitative MRI metrics (e.g. diffusion tensor imaging, magnetization transfer)
- Texture analysis (e.g. grey level co-occurrence matrix)
- Extraction of metrics within anatomical regions (e.g. white matter tracts)
- Manual labeling and segmentation via a Graphical User Interface (GUI)
- Warping field creation and application
- NIFTI volume manipulation tools for common operations
